rs252743678 SNP Detail

Summary

• ID
  rs252743678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16192963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGCCAG ACTCTGGGCA
  TATTTATTAG TGACAATCAT TTTCACCTCT GGAAAACCTA CCTCTATGAA AAACCCACCG
  AAGAAGCAAA GAGCAACTCG TAGGGTATTG AATTAGTGAT TAATTTTGGA ACACTGAAAC
  TTTTGCTGTT AGAACAAAAA CAAAATAAAA ACAGAAGCAA CGAGCGACAT CAACAAAAAG
  Y
  CAGCGAACCT TACCCCCAAC TCAATTTTAT TTTTTGTAAA GTGACTAACT ACTTTTTGCC
  AAGGAATACA ATCTTGACAA TGGGCTCTCA GACCCTATGC TGAACGACTC AATCCTTAAG
  AGGAAAAACT TTCATGGATT CTAATCATTG GCTCAGGACC ACACTAACCT GTTGCTGTGG
  AGAAAAATAC CTGTCCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387820271	MGP_WTSI_13_16110211	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252743678					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387820271	MGP_WTSI_13_16110211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16192963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	581 bp distal
Inhba	inhibin beta-A	within coordinates
Tssr118436	transcription start site region 118436	1672 bp downstream
Tssr118437	transcription start site region 118437	1436 bp downstream
Tssr118438	transcription start site region 118438	1322 bp downstream
Tssr118439	transcription start site region 118439	1274 bp downstream
Tssr118440	transcription start site region 118440	1080 bp downstream
Tssr118441	transcription start site region 118441	965 bp downstream
Tssr118442	transcription start site region 118442	745 bp downstream
Tssr118443	transcription start site region 118443	261 bp downstream
Tssr118444	transcription start site region 118444	200 bp downstream
Tssr118445	transcription start site region 118445	1541 bp upstream