rs252756620 SNP Detail

Summary

• ID
  rs252756620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113284682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGTACGGG CCGGGGCCGG GAGGTAGTGC
  CAGTGGAGAA GGGGCAGCCC TGGCGAGGCG CCTTAGGCTC CTCCTGAGCC CCTGGAGCAG
  GGAGAATTGA CATGCCATTC GTTCGTGGGG AGCGTCCGCG GCAGCAGTGT TCCCTTTGAG
  R
  CTGCCTGGGC CAGAGGCAGA AGGGAAACCT TGTTTGACTT GTTACACTTT GACAAAAGGG
  AAGCGGCGCA GCATCCGGGA GATTGGGCTC TAGCCCCGCG GGCCTTGTCC CACCCCTTAC
  CCCTTACTTC CTTCTGCTCC TGGAGTTCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910481	CHEV_6_113257715	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252756620					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113284682 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1047 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	1048 bp downstream
Rr636484	regulatory region 636484	282 bp distal
Rr636485	regulatory region 636485	within coordinates
Rr636486	regulatory region 636486	174 bp proximal
Rr636487	regulatory region 636487	604 bp proximal
Tssr58189	transcription start site region 58189	744 bp downstream
Tssr58190	transcription start site region 58190	491 bp downstream
Tssr58191	transcription start site region 58191	475 bp downstream
Tssr58192	transcription start site region 58192	120 bp upstream
Tssr58193	transcription start site region 58193	146 bp upstream
Tssr62434	transcription start site region 62434	46 bp downstream