rs252759354 SNP Detail

Summary

• ID
  rs252759354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTTAGGC TCTCTTTTAA AAGCCGATCT GACTCCACTG
  CCCAGCCAGA TGTCCCAATC GCCGTCAAGA CAGCCTTTCC CAACCACACC TAGATGTCCT
  Y
  CGGAGACCTT TCCACCCCTA AGCCTACCTG AGCCCTAGTA ACCTAGACAG CCTCCCTAAG
  CCCTCTCCCA GCTTTCCGGC CCGACCCAGG ACACCTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322135226	CHEV_7_31339790	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252759354					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1237 bp distal
Cpgi18810	CpG island 18810	174 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	670 bp downstream
Mir9769	microRNA 9769	1867 bp downstream
Tssr65780	transcription start site region 65780	1499 bp downstream
Tssr65781	transcription start site region 65781	1462 bp downstream
Tssr65782	transcription start site region 65782	1 bp upstream
Tssr65783	transcription start site region 65783	76 bp upstream
Tssr65784	transcription start site region 65784	100 bp upstream
Tssr65785	transcription start site region 65785	152 bp upstream
Tssr65786	transcription start site region 65786	170 bp upstream
Tssr65787	transcription start site region 65787	264 bp upstream
Tssr71789	transcription start site region 71789	83 bp upstream
Tssr71790	transcription start site region 71790	6 bp downstream