rs252764107 SNP Detail

Summary

• ID
  rs252764107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108635943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAGCGC CGCAGGTTCT
  GCGTTTCAGA TGCTTTCCCA GCTCCGGGCT GTTAGAAGGT CAAAGAGACC AGATTTTTCC
  AATGCAGGTC GGTGGGGGTG GGGCCGGGCG GCCTCCGCGA GATTGAAGAG AGCTGGGGCC
  CCTGGTGCTG CCCCTTTGTG CCCCGCGCAC CGGCCTGTGG GTTAACCCCT ACTACCTAAA
  Y
  CTCTTGGTTA GTATTAAATG AAAACTTTCT CATCTTATAT TCCCTGCCAG TGGCCCTGTT
  AGACTTTCTG CTGAAGGCGG TCTTCTGGTT GGCCTCGTTG GCTCCTTCCC AAAGGTCCTT
  GTAAATTCAA GGTCAAAATC CGTGTTTGCC ACCTCCACTG TCTCCAGCCG CGAGCTCGAC
  TGGGTAAAGG GCTCAGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321893489	CHEV_6_108608976	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252764107					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108635943 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	within coordinates
Bhlhe40	basic helix-loop-helix family, member e40	1647 bp upstream
Cpgi17812	CpG island 17812	147 bp proximal
Gm17055	predicted gene 17055	within coordinates
Rr636153	regulatory region 636153	472 bp distal
Rr636154	regulatory region 636154	within coordinates
Rr636155	regulatory region 636155	455 bp proximal
Rr636156	regulatory region 636156	1157 bp proximal
Rr636157	regulatory region 636157	1742 bp proximal
Rr636158	regulatory region 636158	1927 bp proximal
Tssr58067	transcription start site region 58067	361 bp downstream
Tssr58068	transcription start site region 58068	312 bp downstream
Tssr58069	transcription start site region 58069	212 bp downstream
Tssr58070	transcription start site region 58070	169 bp downstream
Tssr58071	transcription start site region 58071	682 bp upstream
Tssr58072	transcription start site region 58072	1452 bp upstream
Tssr58073	transcription start site region 58073	1498 bp upstream
Tssr58074	transcription start site region 58074	1537 bp upstream
Tssr58075	transcription start site region 58075	1634 bp upstream
Tssr58076	transcription start site region 58076	1790 bp upstream
Tssr58077	transcription start site region 58077	1873 bp upstream
Tssr62390	transcription start site region 62390	421 bp downstream
Tssr62391	transcription start site region 62391	820 bp downstream