rs252771454 SNP Detail

Summary

• ID
  rs252771454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3990384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGTTT GATTTTTTGA
  TTCATTGTAT ATTACCACAA GAACATTTCT ACTTAAAATT TTTTAAAATT ATTATTGCAT
  TGTTATAGTC TGTGCACATG GGCATGAGGG TATATCACAG TGTATGTGGG GAGATCGAAA
  GCCAACTTTG TAGGGGCTGG AGAGATGGCT CAGCGGGTAA GAGCACTGGC TGCTCTTCCG
  R
  AGGAACCTGA GTTCAAATCC CAGCAACCAC ATGGTGGCTC ACAACCATCT GTAATGGGAT
  CCGATGCCGT CTTCTGGGGT GTCTGAAGAC AGCTACATTG TACTCACATA CATAAAATTA
  TTAAATCTTT AAAACAAAAA TCTTGTAGAG TTTGTCTCTC CTGTCTCTCC TTAGGTTCTA
  GGGATTGAAT TGAGGTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323872984	CHEV_12_3940384	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252771454					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3990384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4368	CpG island 4368	1924 bp proximal
Rr279	regulatory region 279	1645 bp proximal
Rr256294	regulatory region 256294	217 bp proximal
Rr267315	regulatory region 267315	1417 bp proximal
Rr370609	regulatory region 370609	1645 bp upstream