rs252773945 SNP Detail

Summary

• ID
  rs252773945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143099212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC ACATGGCTCA CTTGGCTGCA
  R
  AGGTCACTCC ATGCCCTGGC AGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325982783	CHEV_X_140750759	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252773945					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143099212 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	1750 bp upstream
Cpgi22981	CpG island 22981	1572 bp proximal
Gm33235	predicted gene, 33235	within coordinates
Tssr162274	transcription start site region 162274	1583 bp upstream
Tssr162275	transcription start site region 162275	1775 bp upstream
Tssr162276	transcription start site region 162276	1822 bp upstream
Tssr162277	transcription start site region 162277	1849 bp upstream