rs252774954 SNP Detail

Summary

• ID
  rs252774954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74770334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGGCA GCATTCACAA
  CTCCCAGCAA GGACTTCCCC ACTATGCTCA TCCCGGCGCG GCTATGCCCA CCGACAAGAT
  GCTCACCCCA AATGGCTTTG AAGCCCACCA CCCTGCCATG CTCGGTCGCC ACGGGGAGCA
  GCACCTCACG CCCACCTCGG CCGGCATGGT ACCCATCAAC GGCCTTCCTC CGCACCATCC
  Y
  CATGCCCACC TGAATGCCCA GGGCCACGGA CAGCTCCTGG GCACAGCCCG AGAGCCCAAC
  CCTTCGGTGA CCGGCGCGCA GGTCAGCAAT GGAAGTAATT CAGGGCAGAT GGAAGAGATC
  AATACCAAAG AGGTGGCGCA GCGTATCACC ACCGAGCTCA AACGTTACAG CATCCCACAG
  GCCATCTTCG CGCAGAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378074136	MGP_WTSI_9_74710859	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252774954					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378074136	MGP_WTSI_9_74710859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74770334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22034	CpG island 22034	within coordinates
Gm20649	predicted gene 20649	within coordinates
Gm33562	predicted gene, 33562	within coordinates
Gm68752	predicted gene, 68752	within coordinates
Onecut1	one cut domain, family member 1	within coordinates
Rr206725	regulatory region 206725	within coordinates
Tssr2940	transcription start site region 2940	1115 bp downstream
Tssr86108	transcription start site region 86108	1188 bp downstream
Tssr86109	transcription start site region 86109	1168 bp downstream
Tssr86110	transcription start site region 86110	1137 bp downstream
Tssr90520	transcription start site region 90520	343 bp downstream