rs252776404 SNP Detail

Summary

• ID
  rs252776404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135144224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACAAAA CTGCCCTTAA
  GTCATTGCAG ACCCGGAGCT GCTGCGAGCC TGCCACGAGG TTCTCGCGAG ATCCGCCACC
  TCCATCCCAA GTGAGGAAAC GGGGGGCCAC TCAGGGAGGG GCGTGGGGCC TCGACCGCGC
  AGCTGCCGCT TCCATTACCT TCCTCCTAAG GTCTCCTTCC GGTTCTCGAT GCTTCTCTGA
  R
  TTTAAGGGTT TCCGCCACTC GCCTACCCTC CCCCTCAGCC CATGACCCGC CTCCGTCCCC
  CGCCCTCCCG GCCCGACCTC CGATCGCTTT AGCGAGAAGG TGCTGTTCCG ACAGGGAGAC
  GGCAAGCGGG CGGCACGTCC ACTCGGCCCG AGCGAGGGAA GCAAACCGCT CCCCCCTGAA
  CCCCTCGGCT CGCCCCGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359834785	MGP_WTSI_3_135101427	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252776404					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359834785	MGP_WTSI_3_135101427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135144224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			within coordinates
Cpgi13855	CpG island 13855			within coordinates
Rr367562	regulatory region 367562			163 bp downstream
Rr367563	regulatory region 367563			19 bp downstream
Rr398041	regulatory region 398041			1712 bp upstream
Rr585708	regulatory region 585708			423 bp distal
Rr585709	regulatory region 585709			219 bp distal
Rr585710	regulatory region 585710			within coordinates
Rr585711	regulatory region 585711			139 bp proximal
Rr585712	regulatory region 585712			759 bp proximal
Rr585713	regulatory region 585713			904 bp proximal
Tssr1058	transcription start site region 1058			1799 bp downstream
Tssr31809	transcription start site region 31809			337 bp downstream
Tssr31810	transcription start site region 31810			310 bp downstream
Tssr31811	transcription start site region 31811			160 bp downstream
Tssr31812	transcription start site region 31812			73 bp downstream
Tssr31813	transcription start site region 31813			11 bp downstream
Tssr31814	transcription start site region 31814			11 bp upstream
Tssr31815	transcription start site region 31815			63 bp upstream
Tssr31816	transcription start site region 31816			80 bp upstream
Tssr31817	transcription start site region 31817			259 bp upstream
Tssr31818	transcription start site region 31818			563 bp upstream
Tssr31819	transcription start site region 31819			591 bp upstream
Tssr31820	transcription start site region 31820			626 bp upstream
Tssr31821	transcription start site region 31821			638 bp upstream
Tssr31822	transcription start site region 31822			921 bp upstream
Tssr31823	transcription start site region 31823			979 bp upstream
Tssr31824	transcription start site region 31824			1007 bp upstream
Tssr35782	transcription start site region 35782			457 bp upstream
Tssr35783	transcription start site region 35783			139 bp downstream
Tssr35784	transcription start site region 35784			194 bp downstream
Tssr35785	transcription start site region 35785			1908 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				mRNA-UTR