rs252779882 SNP Detail

Summary

• ID
  rs252779882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87613886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACATTT GGAGGAGGCA
  GGAACTTACA GCCAACAGTT TGTTGTTTCT CACTTAAACA TTCCTGCATC TATTGATGCC
  CACTGTATGG AGAGAATGAC CACGGGCTTG AATCTTACTC CGAAGATTTT TTTCTTACGT
  GAGATGAGTT TACGCATATT TGATATTTTT TAGATTTAAA AATTAATCAT TGTAATATCT
  Y
  TCAGACCTTC ATATAACCGA TTCAGGAAAG GTGTCTCCTT TTATTTAGGA CTAATTATTT
  TAAAACGTAG GTCCTGGGAT TTTAATTCTG TTTGTCTTTA ATGATATAGG TTTAACTTCA
  AAACTTCACA AAGTAAACCA TGTTTTATGA ATTTCTGTAT GTTTTTTGAA AGTTCTGTAT
  GTTAAAAGTA GCTTCGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378383653	MGP_WTSI_9_87626668	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252779882					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378383653	MGP_WTSI_9_87626668	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87613886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	369 bp distal
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Gm69731	predicted gene, 69731	434 bp downstream
Rr684220	regulatory region 684220	83 bp distal
Rr684221	regulatory region 684221	399 bp distal
Rr684222	regulatory region 684222	434 bp proximal
Rr684223	regulatory region 684223	1535 bp proximal
Tbx18	T-box18	573 bp upstream
Tssr2959	transcription start site region 2959	589 bp upstream
Tssr90806	transcription start site region 90806	676 bp upstream
Tssr90807	transcription start site region 90807	661 bp upstream
Tssr90808	transcription start site region 90808	560 bp upstream
Tssr90809	transcription start site region 90809	548 bp upstream