rs252794167 SNP Detail

Summary

• ID
  rs252794167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70835399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGAGAT GCAGGGAAGG
  GGGGGGGGGG GAGGGGACAG CCATCAAATC CTGGGGCAGA TGAGAGCAGG GCAGAGCTCT
  CCACCTGCAG CTGCTACTAG CTACCAGACC AAAAAAACTA CCAGGCAAGT TCCTCTAAAC
  AATAGCAATA TTTTTTAGAA AGAGACACAA GGATCTCTAC TGTTGGGTCC GGAAGGGGCA
  R
  AAAGCCGTAC TCTGAGTGGT TCATATTCCA CTTGGATGTT CCAACCTGAG GGAAGACCAA
  ACTCCCCAGA CAGTGGATGG AGCTGAAAAG AGATTCCTAT GTGGCATAAA GCACACTTTC
  TGAACATGGT CTGTATGTTG CACACTGCAG GTAACCTGCC TAAAAATATG TCCCTCCGCT
  CTCTTCATCT GCAGCCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391468984	MGP_WTSI_14_70997766	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252794167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391468984	MGP_WTSI_14_70997766	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70835399 () rs orientation: forward

Symbol	Name	Function Class
B930095I24Rik	RIKEN cDNA B930095I24Rik gene	1456 bp upstream
Cpgi6702	CpG island 6702	1129 bp proximal
Fhip2b	FHF complex subunit HOOK interacting protein 2B	Intron
Rr369865	regulatory region 369865	1487 bp upstream
Rr494968	regulatory region 494968	897 bp proximal
Rr494969	regulatory region 494969	1866 bp proximal
Tssr4471	transcription start site region 4471	1599 bp downstream
Tssr129613	transcription start site region 129613	1842 bp downstream
Tssr129614	transcription start site region 129614	1854 bp downstream
Tssr129615	transcription start site region 129615	1873 bp downstream