rs252800320 SNP Detail

Summary

• ID
  rs252800320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:68800197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCGCCAC TTGACCCATG
  AGCCTCAGTT TCCCAGACTG CACATACAAG GCAATGCTGG ACAGCTTACA GACGCTCATC
  GGGGAGCCCT GGATGGAGAC CCCTGATCTA GGGACCGGAA GCGCCCCTAC AATGTCCCCG
  CTGCGGGCCC GCGCAGTCCC AGTGCCCCCA CGAGGCGGCG CGCGCCGGGC GGTCAGCATA
  R
  CGCGCAGGCG CGGCGGGCGG GGCGGGGAGG GCGCGGGGCA CTGCGCGGCG GCTCAGAGCG
  CGCGGGGTGG CGCGCGGGGC GGGTCGTGGC AGAGCAAGGC ATCGTCGCAG CCGGCGAGCA
  AGACTGGCCA GCGCTCCTCG GCTTTCCAGC CCGCTCTCTT CGCTCATCCC GCCGCCTTGC
  AGCCCGCGGC CCGCAGCGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss394433426	MGP_WTSI_15_68758778	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs252800320					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394433426	MGP_WTSI_15_68758778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:68800197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7148	CpG island 7148	within coordinates
Khdrbs3	KH domain containing, RNA binding, signal transduction associated 3	72 bp upstream
Tssr131505	transcription start site region 131505	32 bp upstream
Tssr131506	transcription start site region 131506	47 bp upstream
Tssr131507	transcription start site region 131507	66 bp upstream
Tssr131508	transcription start site region 131508	75 bp upstream
Tssr131509	transcription start site region 131509	114 bp upstream
Tssr131510	transcription start site region 131510	355 bp upstream
Tssr131511	transcription start site region 131511	1011 bp upstream