rs252805292 SNP Detail

Summary

• ID
  rs252805292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62321239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aagaCAGCT GAACAAATCA AACCCCTTCT
  GTGGAAAACA Gttgtgtgct gtggaaaaat gtgtgtgtgt gtaagagcat gccacgtgcg
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtatgtgtg tgtgtgtgtg
  Y
  gcgtgtccac agaggccaga agggggcatc agattgtgag ccacagcaca gagatgctag
  gaacagacct ggaatccttc ccaagacgtt tggcctctga gccatctctc ctgccTTGCA
  GACACAGCCT GTTCCCCCTT CTGCGGAGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322982309	CHEV_9_62261764	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252805292					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62321239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21896	CpG island 21896	1490 bp proximal
Gm40523	predicted gene, 40523	380 bp downstream
Rr1154	regulatory region 1154	692 bp upstream
Rr196313	regulatory region 196313	439 bp distal
Rr196314	regulatory region 196314	within coordinates
Rr196315	regulatory region 196315	1762 bp proximal
Rr201157	regulatory region 201157	1438 bp distal