rs252808679 SNP Detail

Summary

• ID
  rs252808679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGGGGA AGCAACCCAG
  CTACTTCTGG TGCCAAGAGC CACCCGCCCG CAGAGCCCTT TCTCACAGAG GCACCTCCTC
  CCCAGTGAGG CCTCCAGGGT TTAAGAGACA GGATTAGAGC CCAGACAGCT AGGGCTGTAA
  ACCCAGCCAC CTGCTGGGTC TGTTCACGGT CTCCTAAATG GGATGGCCCC TCAGTGTCTG
  R
  GTGGTTGTGC CCCTTACTCC AGGCTGCTGG GGTGAGAGCT CCCTCAGCTT CAGCAGACAC
  TCACTGCTTC TGAAGGCTAT GAGCTTTGAG GTCCTTGTGG TGAGAGAGGT CCTTGATGGC
  TGCACAGGGC ATTCAGTGTA CCTGCTGGGC ACTAGGGTCC TGAGGACACA GGGGACCCTC
  ATCCTTTCTT TCAGGATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704301	CHEV_5_139827954	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252808679					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337755 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	617 bp upstream
Rr623253	regulatory region 623253	1874 bp distal
Rr623254	regulatory region 623254	593 bp distal
Rr623255	regulatory region 623255	92 bp distal
Rr623256	regulatory region 623256	127 bp proximal
Rr623257	regulatory region 623257	1696 bp proximal
Tssr49499	transcription start site region 49499	607 bp upstream