rs252808893 SNP Detail

Summary

• ID
  rs252808893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56808840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTTACC ATTATCCTAG
  AGTTTGCTTC CACTACGCTC AAGACAGTTG GCAGTATCCT AGAGTTTGCT TCTGCTCTTG
  GTGTCTACTG CCCCTTTACC TAATAGTTTA CTTCTTGGAT GCAAACTCTC CATTAAGCAA
  GTTCAAATAA GTTTGAAATG GTGTAAGATT ACAGGAGCAT TTGTAGGTCT AAATTATCTA
  Y
  CCTGTTGCTG CTTTTAAAAT AAATACTAAA TAAAACTATT GTAAATGAAG TGATGTTTAT
  GAGAAAAATC AAAACCTGAC CTTAGTCATT TAAAGACAAA AAAAATAAAA GAAAAATTTT
  AGTTTTATTA TTAAAAACAA ACAAACAAAC AAAGCAGAAT TTGAAGTTGA ATATTCTTTC
  TTTACAGTGA GTTGAATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859371	CHEV_19_56894898	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252808893					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56808840 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	1498 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	1229 bp proximal
Rr406045	regulatory region 406045	1709 bp upstream
Rr550139	regulatory region 550139	1868 bp distal
Rr550140	regulatory region 550140	1008 bp proximal
Rr550141	regulatory region 550141	1509 bp proximal
Rr550142	regulatory region 550142	1772 bp proximal
Tssr157215	transcription start site region 157215	1520 bp upstream
Tssr159886	transcription start site region 159886	1672 bp downstream
Tssr159887	transcription start site region 159887	1753 bp downstream