rs252811110 SNP Detail

Summary

• ID
  rs252811110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30352965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGAAG CACGCCCCGT
  CAGGGTTGAG ACAATCCCAC TCTAACCTTC AGATCTTACC TTAAGGGTTT TTGTTCATTT
  GGAGATGTTA TTCATCTTGC TGGGTTGTTT TTTCCCCCCT ACCTCTTTGA GACAGGGGTC
  CTACTGTGTA GCTGTAGCTG GCCTGAACCT TGTTAGGTAG ACCAGCCTGA TCTGGAATCC
  R
  CAGAGATCCT CCACATCCAC ACCGTTCTAC AGGAGGGACT TGAGTGTTAA CGATGAAGTT
  TGCCCTTAGT GTGAAGTGGC AGAAAACACT GGTGGGGCTG CAGAATCAGC AGTGGGGGCC
  AAGTGAGTCT CAGTCAGACA GAAGTGATTG AGGATTCAGC CACTCAGAGG TCACTGGTGA
  CCTGACCAAG GAATCTTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325130488	CHEV_16_30534233	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252811110					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30352965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8161	CpG island 8161	1823 bp distal
Gm60148	predicted gene, 60148	703 bp downstream
Rr514265	regulatory region 514265	1790 bp distal
Rr514266	regulatory region 514266	1958 bp distal
Rr514267	regulatory region 514267	983 bp proximal
Rr514268	regulatory region 514268	1527 bp proximal
Tmem44	transmembrane protein 44	within coordinates
Tssr137879	transcription start site region 137879	1919 bp upstream