rs252819042 SNP Detail

Summary

• ID
  rs252819042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58277604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTAGACTT TCCGGCAGCT TTTCTGCGTG
  CTTGTTCCTG CCTCTCAGGA CAGTGTGATA ACGTGAATCT AAGTAACGGC TTTCCTCTAC
  CCAGAATCCG GAACACAGAA TGTAACTGAC ATGCAGTGCA TGTCTTGCTA TGGTCACAAC
  M
  AAACACTCTG CGAGGAGAAA CCCCAAAAGT GTTACGAAGG AGAACAATGT GTCTTCATCA
  TTGCGGAGAT GGTAAATGGT AAGACTGGAG CTTCAGCTAC TTAAATGGGC TCAAATTGAA
  ACGAGATTCA AGTTGCTGTG CTGCAGCAGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690056	CHEV_11_58200280	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252819042					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58277604 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	17 bp downstream
Tssr101740	transcription start site region 101740	9 bp upstream
Tssr101741	transcription start site region 101741	37 bp upstream
Tssr108157	transcription start site region 108157	within coordinates
Tssr108158	transcription start site region 108158	44 bp downstream