rs252819614 SNP Detail

Summary

• ID
  rs252819614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161576469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATAAGACA CCAAATTATA AGACATCGAA
  CAGGAGAAAT TAAATCACTC ATACAATTCC CCCTTCTGTT TTGTCTGCCA CCTACACCTC
  AGCATGTGCC TCACCCGCGC TATGCTGCGG TCATTTAAGT CACCCTGGAT ATTTACATAG
  Y
  ACATATTATG CACCACTTAT TTCTTTGCAA TGCAAAAGTG CCCAGGCACA GCTCAACTTC
  CCCACAAATA GATCTACAAC TGAAATCCAA ATCTGCCTGG CTTCAAAACC TTCCGCTATT
  AAATGACCTA TTTTATGCGA AGCTTCCTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081477	CHEV_1_163679031	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252819614					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161576469 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	1255 bp downstream
Gm70711	predicted gene, 70711	within coordinates
Gm70716	predicted gene, 70716	1295 bp downstream
Rr396465	regulatory region 396465	375 bp downstream
Rr421832	regulatory region 421832	408 bp distal
Rr421833	regulatory region 421833	within coordinates
Rr421834	regulatory region 421834	1785 bp proximal
Rr421835	regulatory region 421835	1898 bp proximal
Tssr9696	transcription start site region 9696	1349 bp downstream