rs252828678 SNP Detail

Summary

• ID
  rs252828678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138234230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGAGCCG CGACTTGCGA
  GTGGAGGTCA GAGGACAGCT TTTAGAGTCC CGAGGATCGA GATTCAGGCG CTTTTCTCGA
  ACCATCACTT AAGCTCATCA GCATTTGCTT TTCCATTTGA TGTTTCCTTC TTAACTTTAT
  ACTGCTTCCC TCTTAATGAA AGCGCTATTT TGAAATTAAT TGAAGCAAGA TGCACATAGA
  R
  CATCACGGCG TAACTCCGGT AGCCCGAAGG TGGTGATTTT TTTTTTTTTT TTTTCTTCTG
  TCATGGTTTG GGTTTGCCAG CAGCTGGCTC ACTGGCCATC CATCGCAGGT TTTTTTTTTT
  TTTTTTAAGG AATGTCACAC ATGTGTGAAA GTCTCAGGCG CATAAAGGCA TAGACTAGCA
  ACCAGAAACC TCTGTAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359912489	MGP_WTSI_3_138191433	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252828678					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359912489	MGP_WTSI_3_138191433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138234230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13876	CpG island 13876			64 bp distal
Eif4e	eukaryotic translation initiation factor 4E			Intron
				mRNA-UTR
Mir1956	microRNA 1956			1984 bp downstream
Rr398072	regulatory region 398072			1240 bp downstream
Rr586157	regulatory region 586157			1731 bp distal
Rr586158	regulatory region 586158			1163 bp distal
Rr586159	regulatory region 586159			1544 bp distal
Rr586160	regulatory region 586160			within coordinates
Rr586161	regulatory region 586161			804 bp distal
Tssr31992	transcription start site region 31992			1948 bp downstream
Tssr31993	transcription start site region 31993			1918 bp downstream
Tssr31994	transcription start site region 31994			1887 bp downstream
Tssr31995	transcription start site region 31995			1838 bp downstream
Tssr31996	transcription start site region 31996			1180 bp downstream
Tssr31997	transcription start site region 31997			125 bp upstream
Tssr35899	transcription start site region 35899			1506 bp upstream
Tssr35900	transcription start site region 35900			1467 bp upstream