rs252838644 SNP Detail

Summary

• ID
  rs252838644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115520205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAAGTTT CAGGACAGCC
  AGGGCTATAC ATATATATAT ATAACCATAT ATATATATAT AACCCTGTCT CAAAAAACCA
  AAAAAAAAAA AAGAGTTAAT CTTTTTTAAA GATTTATTTA TTTTATGTAC ATAAATGCAC
  TGTAGTTGTC TTCAGACACA CCAGAAGAGG GCATCGGATC CCATTACAGA TGGTTGTGAA
  Y
  TATCATGTGG TTGTGGGAAT TGAACTCAGA ACCTTTGGAA AAGCCGTCAT CTTTTTGTTG
  AGCCATCTCT CCAGCCCCTT TTTGTATTTT TTTTTTTTGG TTTTTCGAGA CAGGGTTTCT
  CTGTGCAGCC CTGGCTGTCC TGGAACTCAC TCTGAGTTCT GACCAGGCTG GCCTCGAACT
  CAGAAATCCA CCTGCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384832967	MGP_WTSI_11_115490693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252838644					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384832967	MGP_WTSI_11_115490693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115520205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	900 bp distal
Gm74427	predicted gene, 74427	384 bp downstream
Rr231925	regulatory region 231925	1996 bp proximal
Rr246115	regulatory region 246115	204 bp distal
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	1084 bp upstream
Tssr105892	transcription start site region 105892	956 bp downstream
Tssr111780	transcription start site region 111780	1670 bp upstream
Tssr111781	transcription start site region 111781	1641 bp upstream
Tssr111782	transcription start site region 111782	1620 bp upstream
Tssr111783	transcription start site region 111783	1588 bp upstream
Tssr111784	transcription start site region 111784	1257 bp upstream
Tssr111785	transcription start site region 111785	1215 bp upstream
Tssr111786	transcription start site region 111786	1129 bp upstream
Tssr111787	transcription start site region 111787	1081 bp upstream