rs252840228 SNP Detail

Summary

• ID
  rs252840228
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156940277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGCGCA GTCTGCTAAG
  CTCACAAAGG CAGTCCAGAA TGTTCTAAAA CCCGTAAACA CACTGCAGCA ACAGTGGTGC
  CGGAGAGAGC AGCCAGAGGG TGGGGTCGGT GGTCAGCTGA CCAGTTCAGC TCAGAAGAGA
  TGGGCGAAGA CCTGTCCCCA GGCTGGCAGC AGTGAGTCCC CTGGGGCTGG AGGGGTTGCA
  S
  GTGCTTTAAA ACTCTGATTT TGTCTGGAGT CACGACAGAC TCAGGAGTAG CCTGGTATGA
  GGTGTCCTCT GAACCTAGCC TCTCCTAAAG CAGGGGACAG GGGGAGTTGT ACCAGGAAGA
  CAGAGATGGA GCTGAGGTCA TCGGTAGAGT ACCCGCCTGA CACACCTCAG CTCCTCTGAG
  GAAAGAACTG CTCCCGATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356251455	MGP_WTSI_2_156924093	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252840228					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356251455	MGP_WTSI_2_156924093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156940277 () rs orientation: forward

Symbol	Name	Function Class
Rr568433	regulatory region 568433	1593 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tldc2	TBC/LysM associated domain containing 2	1875 bp downstream
Tssr27104	transcription start site region 27104	101 bp downstream
Tssr27105	transcription start site region 27105	146 bp downstream
Tssr27106	transcription start site region 27106	235 bp downstream
Tssr27107	transcription start site region 27107	379 bp downstream
Tssr27108	transcription start site region 27108	505 bp downstream
Tssr27109	transcription start site region 27109	577 bp downstream
Tssr27110	transcription start site region 27110	631 bp downstream
Tssr27111	transcription start site region 27111	782 bp downstream
Tssr27112	transcription start site region 27112	812 bp downstream
Tssr27113	transcription start site region 27113	829 bp downstream
Tssr27114	transcription start site region 27114	903 bp downstream
Tssr27115	transcription start site region 27115	1019 bp downstream
Tssr27116	transcription start site region 27116	1116 bp downstream