rs252842922 SNP Detail

Summary

• ID
  rs252842922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATACATA AATCAGTAAA
  TGAGATCCAC TGTATAAATG GACTCAATTC AAGAAAGCAG AAAGTAGATT CAGAAAATGC
  CTGTGGTGAA AACCAACAGC TCTTCATTAT TAAAGCCCTG AAGACAACAG AAATACAAGG
  AACGTATTTC AATACAATAA AGGAAATATA CAACAAGCCT GTAGCCAACG GAATGCTAAC
  Y
  GGAGAAAAAC TGGAAGCATT TCTGCTAAAA ATCAGGAAAG GGACATGGAT ACTTTCTCTC
  AGTACTTCTT TTCAGCTGAG TACTTGAAGT TTTTGCTACA GCAGTAAGGC AAGAGAAGGA
  GACAAGATGG ATTCAAACAG GAAAGGAAGA AGTCAAGCAA TATTCATTGG CAGATGATAT
  CATTCTTTCT CTCTCTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072485	MGP_WTSI_11_83386931	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252842922					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072485	MGP_WTSI_11_83386931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464255 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	mRNA-UTR
Rr452989	regulatory region 452989	778 bp distal
Tssr103714	transcription start site region 103714	1218 bp upstream
Tssr103715	transcription start site region 103715	1259 bp upstream
Tssr103716	transcription start site region 103716	1921 bp upstream
Tssr109677	transcription start site region 109677	244 bp downstream
Tssr109678	transcription start site region 109678	620 bp downstream
Tssr109679	transcription start site region 109679	898 bp downstream
Tssr109680	transcription start site region 109680	1160 bp downstream
Tssr109681	transcription start site region 109681	1282 bp downstream
Tssr109682	transcription start site region 109682	1551 bp downstream
Tssr109683	transcription start site region 109683	1602 bp downstream
Tssr109684	transcription start site region 109684	1628 bp downstream
Tssr109685	transcription start site region 109685	1673 bp downstream
Tssr109686	transcription start site region 109686	1736 bp downstream
Tssr109687	transcription start site region 109687	1785 bp downstream
Tssr109688	transcription start site region 109688	1832 bp downstream
Tssr109689	transcription start site region 109689	1875 bp downstream
Tssr109690	transcription start site region 109690	1888 bp downstream
Tssr109691	transcription start site region 109691	1898 bp downstream
Tssr109692	transcription start site region 109692	1929 bp downstream