rs252848807 SNP Detail

Summary

• ID
  rs252848807
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17840226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG CCTAGACCGA TGTGGGTCGG
  S
  GGTGGGGGTT AGGAGCCCCA GAGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673701	CHEV_3_17686062	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252848807					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17840226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	within coordinates
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	346 bp downstream
Gm66000	predicted gene, 66000	1278 bp downstream
Rr573837	regulatory region 573837	1655 bp distal
Rr573838	regulatory region 573838	461 bp distal
Rr573839	regulatory region 573839	133 bp distal
Rr573840	regulatory region 573840	14 bp distal
Rr573841	regulatory region 573841	within coordinates
Rr573842	regulatory region 573842	285 bp proximal
Rr573843	regulatory region 573843	1066 bp proximal
Tssr32672	transcription start site region 32672	746 bp upstream
Tssr32673	transcription start site region 32673	505 bp upstream
Tssr32674	transcription start site region 32674	478 bp upstream
Tssr32675	transcription start site region 32675	446 bp upstream
Tssr32676	transcription start site region 32676	245 bp downstream
Tssr32677	transcription start site region 32677	772 bp downstream