rs252856374 SNP Detail

Summary

• ID
  rs252856374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15149306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTCTCG CCGCCCCCTT
  CCCGTGGCTG ACTGCACCTC ACTGGGGATC CGACTTAGCA ACACTGTAAC TCCCCTTGCC
  AGTGAGCATT CCCTGGCCTT GACAAGCCCT TAGTCACTTG CCAGAGGTAA CCTTCTGGAC
  CCTGCCCACC ACACCGCACT TTACATGACA GAGCAGATCA AGCTTTGTCC TGAGCATCAG
  R
  GGGGGGTGGG GTGGGGGGGT GGGGGGGTCA GAAGCACTGA GGGAAAACCA TGAGTGGGAA
  GAAGGAATCG AGTTTTGCCT ACTCCATCCT TGATGGAAAC AGAACTCTGT GCCCCCCTCA
  CTCCTCCCCA CGCCCAACCT GGTTTCTGGA TTCTGTCCTG GAAGGGATAG CTAGTTCAGT
  TTTGGATTAA GGCACTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360679357	MGP_WTSI_4_15076453	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	G	A	G	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs252856374					SNP	G	G	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	G	A	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360679357	MGP_WTSI_4_15076453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15149306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	37 bp distal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	354 bp upstream
Tssr40969	transcription start site region 40969	334 bp upstream
Tssr40970	transcription start site region 40970	297 bp upstream
Tssr40971	transcription start site region 40971	261 bp upstream
Tssr40972	transcription start site region 40972	236 bp upstream
Tssr40973	transcription start site region 40973	449 bp downstream