rs252858622 SNP Detail

Summary

• ID
  rs252858622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126045260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAATCA GCTAGTCAGT
  TGCCTTGTGC CTGCAAGCCC CGTGAGTTCG GGAAGGGGAT TTACAAGGTT CGGAGGGAGA
  GCGGGTTGCT GAAGGGGACG AGGGTGGAGG ACTTTATTTA TAAACAGAAT TGAGGGGGAA
  GAAGGGTCAG TGCCTCAGCT TTGGCTGAAG ATGCATGGCT ATTGGGGTGG GGAACACAGG
  R
  CACAAGGGCT GGTTACTTCC TTCTTTCGTC TTCTGGATCT GGAAGAAGAA AGGCAGGGGA
  TGGAGCAGGC GGGCACAGGA GGGAGAGCTG TATCTCCTTG CGCATCTCCT GCACACTCAC
  CTGGAGGGGC CTAAGGGCCC CTTTCCCTAC TCACCTGTGA TGTGCCAGAC CCCAACCCGC
  CCCCCAGCCA CCACCGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068740	MGP_WTSI_7_133589602	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252858622					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068740	MGP_WTSI_7_133589602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126045260 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Rabep2	rabaptin, RAB GTPase binding effector protein 2	181 bp downstream
Tssr2394	transcription start site region 2394	1550 bp downstream
Tssr69022	transcription start site region 69022	30 bp downstream
Tssr69023	transcription start site region 69023	1817 bp upstream
Tssr74663	transcription start site region 74663	34 bp upstream
Tssr74664	transcription start site region 74664	493 bp downstream
Tssr74665	transcription start site region 74665	818 bp downstream
Tssr74666	transcription start site region 74666	848 bp downstream
Tssr74667	transcription start site region 74667	909 bp downstream
Tssr74668	transcription start site region 74668	1078 bp downstream
Tssr74669	transcription start site region 74669	1117 bp downstream
Tssr74670	transcription start site region 74670	1353 bp downstream
Tssr74671	transcription start site region 74671	1396 bp downstream
Tssr74672	transcription start site region 74672	1409 bp downstream
Tssr74673	transcription start site region 74673	1554 bp downstream
Tssr74674	transcription start site region 74674	1583 bp downstream
Tssr74675	transcription start site region 74675	1592 bp downstream
Tssr74676	transcription start site region 74676	1807 bp downstream
Tssr74677	transcription start site region 74677	1832 bp downstream
Tssr74678	transcription start site region 74678	1864 bp downstream
Tssr74679	transcription start site region 74679	1888 bp downstream
Tssr74680	transcription start site region 74680	1906 bp downstream
Tssr74681	transcription start site region 74681	1933 bp downstream
Tssr74682	transcription start site region 74682	1947 bp downstream