rs252863442 SNP Detail

Summary

• ID
  rs252863442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8799183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCCCAG GAGTTAACGA
  CTTTCTCCTT TTGAAATGCT TGCATGGTTA GAGCTAACCT ATAGTGACTG TCAGGAGGGA
  GAGCTGCTTC TAAGTTTTAC TTCCAAGTAG GTTTTTTTGC CTTAGAGTTT TTTGTACTGT
  TTCGTTGTTT CTTGGTTTTT GTTCTGGATC TTAGTGTTAT AAAATTGGAA TCTATTTTAC
  R
  ATGATTGTAT GCAAAGTATA GTGTTCGGGG TTTTTGTTGT GTCCGATGTC CTGGGACTGA
  GGTCCTATTA CATAACCCTT AATTTGTGTT ATCCCAAATA GCAGATCAAA AGCATTAAAG
  AATAAGGGAG TGTTTTAAAG GAATTGTTGA AAACACTTAA GCCTTCAAAA CATGAAAGCC
  TAAGGAAAAA TTCCATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708523	MGP_WTSI_19_8896309	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252863442					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708523	MGP_WTSI_19_8896309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8799183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10577	CpG island 10577	750 bp distal
Hnrnpul2	heterogeneous nuclear ribonucleoprotein U-like 2	within coordinates
Rr363768	regulatory region 363768	within coordinates
Rr370451	regulatory region 370451	1284 bp downstream
Tssr154831	transcription start site region 154831	1785 bp downstream
Tssr154832	transcription start site region 154832	1759 bp downstream
Tssr154833	transcription start site region 154833	1743 bp downstream
Tssr154834	transcription start site region 154834	1680 bp downstream
Tssr154835	transcription start site region 154835	1570 bp downstream
Tssr154836	transcription start site region 154836	1505 bp downstream
Tssr154837	transcription start site region 154837	1138 bp downstream
Tssr154838	transcription start site region 154838	1115 bp downstream
Tssr154839	transcription start site region 154839	1036 bp upstream
Tssr158070	transcription start site region 158070	488 bp upstream