rs252870342 SNP Detail

Summary

• ID
  rs252870342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48722403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGAGTTT AAGATAAAGG
  ACAGAGACAC TAATAAAGGA TGCTGCTACA TCTTCTTGAG GCTAAGGCTT TTTATTAGAC
  TGACTCACAC AGTGGCTTAG GCTGGCTTCT AACTCAAGGC AATCCTGCTG CAATCCCCTG
  ACAAACTAGG ATAAGAATAA GCCACCATGC TTAACTTCAG TTATGTCTTC TCTTAAAAAT
  R
  CAAGCAGAGG GCTTTATCTA CCTAGCTTTA AACTAACTGT CCTTCCCTCC TTTCATCTCT
  CTTCCTTCCT CCCCCCCCCC CCCCACTTTC TGTGCAGTCT CTTAGAATGT CACCTCCCTA
  GACCCCTTGA AACCCTAGTG TTCACAACAG AGAGCCAAGT ATACTTTCCT GACAATAGAA
  AGCATCATGG GGGAATTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368228428	MGP_WTSI_6_48695468	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252870342					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368228428	MGP_WTSI_6_48695468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48722403 () rs orientation: forward

Symbol	Name	Function Class
Gimap1	GTPase, IMAP family member 1	1674 bp downstream
Gimap5	GTPase, IMAP family member 5	728 bp upstream
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	1198 bp proximal
Rr146256	regulatory region 146256	1802 bp distal
Rr146257	regulatory region 146257	197 bp proximal
Rr368069	regulatory region 368069	537 bp upstream
Rr399641	regulatory region 399641	1026 bp upstream
Tssr56207	transcription start site region 56207	700 bp upstream
Tssr56208	transcription start site region 56208	719 bp upstream
Tssr56209	transcription start site region 56209	754 bp upstream
Tssr56210	transcription start site region 56210	768 bp upstream
Tssr56211	transcription start site region 56211	1238 bp upstream
Tssr60779	transcription start site region 60779	625 bp downstream