rs252878194 SNP Detail

Summary

• ID
  rs252878194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84337816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAATGG ATGAACCACA
  ACCATACACT ATCTGTCCAA AGTTCAAAGG GCAAGGAACC TAAAGTGACA CTGTTTGAAG
  AGATTAGTGT GTGACAAAAC TAATTTTTAA AAGGCTAGAG AATGAGCAAA TCCACCGAGT
  CTAGAATGTT TATTTACCTC AGTAAGAAAC AGTAAACTGG GTTAGGCCAG ATAAGAAACT
  Y
  GTGAACACAT ACAAGTTTGA GTAATGTTCT AGTTCTGGCT CTGGAGTGAG GAGTCTGAAA
  GTTTATGTTT TCTCTCTTTA TAGTACATTG TGTTGTGTAT TCTCCCAGGA CTGACCATTA
  CTTTAAAAAC TTTGTGATAT AACTCATATT GTGAGTTTTG ACATTAACAC AGGAAAGTAT
  GGCTGCAGTC AAAACAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372145339	MGP_WTSI_7_91837118	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252878194					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372145339	MGP_WTSI_7_91837118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84337816 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	1032 bp upstream
Cpgi19383	CpG island 19383	698 bp proximal
Rr400423	regulatory region 400423	1206 bp upstream
Rr650631	regulatory region 650631	within coordinates
Rr650632	regulatory region 650632	604 bp proximal
Rr650633	regulatory region 650633	1147 bp proximal
Rr650634	regulatory region 650634	1339 bp proximal
Tssr73444	transcription start site region 73444	1186 bp downstream
Tssr73445	transcription start site region 73445	1215 bp downstream
Tssr73446	transcription start site region 73446	1237 bp downstream
Tssr73447	transcription start site region 73447	1296 bp downstream
Tssr73448	transcription start site region 73448	1326 bp downstream
Tssr73449	transcription start site region 73449	1340 bp downstream
Tssr73450	transcription start site region 73450	1372 bp downstream
Zfand6	zinc finger, AN1-type domain 6	within coordinates