rs252887839 SNP Detail

Summary

• ID
  rs252887839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:41865717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCGGAA AGCCCCGCCC
  CTAGCGTCAC TCAAAAGACG TCCCGTCCCC GCTCCAACCA TCACACTGCA ATGGGGGAGT
  ACGTAGACGC AGACCGGGCG TCCCGGTTTG CTCGTGGGGA ACATTGGCTA GGAGACAAAA
  GCAAGTTTTT TTTTTTTTAC AGTGAAGTGA AACCACATTA GAGAAGAGTA GCTCTCGGGT
  R
  CCCTGTCCTT CTTTCTTGTT TTCATGAGGT CTGAGAACAT AACTCACATG ATTGATTTAG
  TCCAAGGGGG CGGGGACATG GTGAGGTTTT GTTGCCATGG AAGCCTGGAG CCTGAAAGAG
  GCGCGGGGGC GGGGTCTGTT TCTGGGCAGC CGGGGACGCT TCGGGCTGCG CGTGCACAGG
  ATCCTTCCTG TCGGTGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364674802	MGP_WTSI_5_42099613	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252887839					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364674802	MGP_WTSI_5_42099613	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41865717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15822	CpG island 15822	within coordinates
Gm72243	predicted gene, 72243	within coordinates
Gm72274	predicted gene, 72274	759 bp downstream
Rab28	RAB28, member RAS oncogene family	217 bp upstream
Rr399068	regulatory region 399068	within coordinates
Rr610697	regulatory region 610697	1233 bp distal
Rr610698	regulatory region 610698	264 bp distal
Rr610699	regulatory region 610699	within coordinates
Rr610700	regulatory region 610700	169 bp proximal
Tssr46070	transcription start site region 46070	1196 bp downstream
Tssr50838	transcription start site region 50838	1458 bp upstream
Tssr50839	transcription start site region 50839	945 bp upstream
Tssr50840	transcription start site region 50840	693 bp upstream
Tssr50841	transcription start site region 50841	360 bp upstream
Tssr50842	transcription start site region 50842	245 bp upstream
Tssr50843	transcription start site region 50843	204 bp upstream