rs252889983 SNP Detail

Summary

• ID
  rs252889983
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122238148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAAGA AAAGGAAGGA
  AGAAAAGAAA AGAAAAATGG AGGAGTTAAC CCTATGTTTC CTTTTTTTTT ATTCATCATT
  GGTGAGGCTA TCCTCAGCTA CATATCAAGT TCAAGCCAGC CTGGGCTACA TGAGACCCTG
  CCTCAAAAAA GAAAAGGAGC CAGTGTAGCG ACATACTCCC GTCCTCCCAG CACTTGGGAG
  M
  CAGAGGCTAC TCCACTGCTG TCTCCAGCAG CCGGCCTGCC TCCCTGAGCC TCATTTTTTT
  CATAACATGG GGACCCAACT GCTAAGGTGA CCTTGCTCCC ATGGGGTGAC TGGAGACTTG
  AGAGTGAAGT GGTTATCATT TGTCCAGTCT GTGAACAAAT GGCAGCCTCC AAGGTGGTTT
  TGTGTTCAAA GGAGGACATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366510573	MGP_WTSI_5_122550094	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252889983					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366510573	MGP_WTSI_5_122550094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122238148 () rs orientation: forward

Symbol	Name	Function Class
Gm57283	predicted gene, 57283	1818 bp downstream
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	866 bp upstream
Rr124298	regulatory region 124298	852 bp proximal
Rr407055	regulatory region 407055	633 bp proximal
Tssr48619	transcription start site region 48619	699 bp upstream
Tssr48620	transcription start site region 48620	731 bp upstream
Tssr48621	transcription start site region 48621	859 bp upstream
Tssr48622	transcription start site region 48622	887 bp upstream
Tssr48623	transcription start site region 48623	1061 bp upstream
Tssr48624	transcription start site region 48624	1078 bp upstream
Tssr48625	transcription start site region 48625	1692 bp upstream