ATCAGGCCTC CCCACCAGTG TAAACAGCTA GGTATTGTAT GCTATGGAGT ACCAGGCTGT GTCTAAGACA TTCACCATGC AATCTATATC TAGCCCCGAG GAGGAAGAGG CCATTTGTCA CCTCTGTAAC AGAGGAGGGA GCTAGGACAA AGAGGTATAC AAATCTGTCC CAAATCCCAG ATTTATAATG TTCTGGAGCT R GGATTTGAAC TCAGTTCGTC GTCTCCAAAT CCCCAAAGTA AACACTGGGA AAAAGGGGTC AGCTCTGCCT ACCGTGCCAC CCTCTGCCAC TCACTAAGAT AGCCCCAAAG GACTTCAAAG ACCCTCTGAG GAAATGTCTC TCTGTTGTAC CTACCCATCC ATTTTCCAAG ATGGCACTCC CAGAGTCCCT AGGGCTCACG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss383428948 | MGP_WTSI_11_54725347 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | G | G | A | A | G | G | A | A | G | A | A | A | A | G | A | A | A | A | A | G | A | A | G | G | G | A | G | A | A | A | A | A | A | A | G | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs252894633 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | G | G | A | A | G | G | A | A | G | A | A | A | A | G | A | A | A | A | A | G | A | A | G | G | G | A | G | A | A | A | A | A | A | A | G | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss383428948 | MGP_WTSI_11_54725347 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr11:54802671 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gpx3 | glutathione peroxidase 3 | 1458 bp downstream | ||||||
Tnip1 | TNFAIP3 interacting protein 1 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr3503 | transcription start site region 3503 | 1729 bp downstream | ||||||
Tssr101574 | transcription start site region 101574 | 1989 bp downstream | ||||||
Tssr101575 | transcription start site region 101575 | 1942 bp downstream | ||||||
Tssr101576 | transcription start site region 101576 | 1921 bp downstream | ||||||
Tssr101577 | transcription start site region 101577 | 1899 bp downstream | ||||||
Tssr101578 | transcription start site region 101578 | 1814 bp downstream | ||||||
Tssr108015 | transcription start site region 108015 | 1961 bp upstream | ||||||
Tssr108016 | transcription start site region 108016 | 1899 bp upstream | ||||||
Tssr108017 | transcription start site region 108017 | 1858 bp upstream | ||||||
Tssr108018 | transcription start site region 108018 | 1837 bp upstream | ||||||
Tssr108019 | transcription start site region 108019 | 1768 bp upstream | ||||||
Tssr108020 | transcription start site region 108020 | 1749 bp upstream | ||||||
Tssr108021 | transcription start site region 108021 | 1732 bp upstream | ||||||
Tssr108022 | transcription start site region 108022 | 1689 bp upstream | ||||||
Tssr108023 | transcription start site region 108023 | 1465 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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