rs252896360 SNP Detail

Summary

• ID
  rs252896360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109722030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGCTGC TGCAGGGCGG
  CGGCGGAGGC GCGCAAGCGG CGGGTGGAGG CGCCGAGGGC GACTCTTGGG AGGAGGAGGG
  TTTCGGCTCC TCGTCGCCCG TCAAATCACC TTCGACCGCC TACTTTCTGA GCAGCCCGTT
  CTCGCCAGTG CGCTGCGGCG GCCCAGGGGA TGCCTCCCCG CAGGGTTGCG GGGCTCCGCG
  R
  GCCATGGACG ACCCCTGCTC GCCGCAGCCC GACTACCCGA GCACCCCTCC GCACAAGACC
  TTCCGCAAGC TGCGCCTGTT CGACACGCCG CACACTCCCA AGGTAATGGA GGGGGCGGAG
  GAGCCGGCTC CAGGGCCTTT AAAAAAAAAG GCCGCGGCGC TGCAGCCCTG CGCGCCACTG
  CCCGGGTTCG GTTACATAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372699478	MGP_WTSI_7_117266337	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252896360					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372699478	MGP_WTSI_7_117266337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109722030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	within coordinates
Gm45819	predicted gene 45819	1083 bp downstream
Rr400541	regulatory region 400541	750 bp downstream
Rr400542	regulatory region 400542	1057 bp upstream
Rr653190	regulatory region 653190	767 bp distal
Tssr68487	transcription start site region 68487	688 bp downstream
Tssr68488	transcription start site region 68488	528 bp downstream
Tssr68489	transcription start site region 68489	500 bp downstream
Tssr68490	transcription start site region 68490	244 bp downstream
Tssr68491	transcription start site region 68491	45 bp downstream
Tssr74249	transcription start site region 74249	1230 bp upstream
Tssr74250	transcription start site region 74250	67 bp downstream
Tssr74251	transcription start site region 74251	96 bp downstream
Tssr74252	transcription start site region 74252	178 bp downstream
Wee1	WEE 1 homolog 1 (S. pombe)	Coding-Synonymous