rs252902349 SNP Detail

Summary

• ID
  rs252902349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:121335708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAGCTCA AGGCCCTGGT
  GGCCTCTACC CATTTTCTTG GGCCTCATGT AGGTGTGGAT GGATGCGGGC ACCCAGATCT
  TCTTTTCCTT TGCCATCTGC CAGGGGTGCC TGACAGCCCT GGGCAGCTAC AACAAGTACC
  ACAACAACTG CTACAGGTGA GATCTGCTGG TGTGGCGGGT GAGGGCAACC CTGCCTCCAC
  R
  GGAGCTGAGC AGGGCTCATG TGGACACCTT TCCAAGACTC AGCTTCTTTC CCCTACTTTG
  CTGGTCTTCT CTTGCCCTGA CATCTGGTGT TTGTTTGTGT TGCCTGTGCC ATATCACACT
  CCCTGCTCCC CCCATCTTTC TTCCATGTCT TTCTGTTTCT TGTTCCCTTC TTCCTCCTTT
  ACTGCCTGTC TTTCAATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369888327	MGP_WTSI_6_121308767	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs252902349					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369888327	MGP_WTSI_6_121308767	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:121335708 () rs orientation: forward

Symbol	Name	Function Class
Slc6a12	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	within coordinates
Tssr58614	transcription start site region 58614	1933 bp downstream
Tssr58615	transcription start site region 58615	1902 bp downstream
Tssr58616	transcription start site region 58616	1872 bp downstream
Tssr58617	transcription start site region 58617	1857 bp downstream
Tssr58618	transcription start site region 58618	1846 bp downstream
Tssr58619	transcription start site region 58619	1823 bp downstream
Tssr58620	transcription start site region 58620	1200 bp downstream
Tssr58621	transcription start site region 58621	499 bp upstream
Tssr58622	transcription start site region 58622	745 bp upstream
Tssr58623	transcription start site region 58623	932 bp upstream