rs252903664 SNP Detail

Summary

• ID
  rs252903664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125993925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATCAAG CTTGAACTAC
  CAACCACCTA AAGCTACAAG TCTGAGATCT CGTAAATATA GTATTTGGGG AGGTAAAGCG
  GTGTTACTAG CTCCTCACTA ACTCACAGAA ACTACTTTCG AAAAGGCTGT TCCGGAACAC
  GTCCCCAGTT GCGCTGGGGG CCCACAACGG GCGGCACAGC AGGAAGCTGA CGGTTCCTTT
  R
  GAACAGGTCA CCCGGGAAGC GAAGGCGGGA CTTCCGAACC AGTTCCTCCT GCTCGCCCAC
  GGGATTCTCC CTCTGAGCAT GCGCCGTGGT CAGCTTCCCC GTGGCCCTGG CAACCGCCAG
  GCCCCGCCCT CCGGTGTTCT GCGGAAAGCG CTCCGGGGGG GAGCGCGTGG AGCGGAGGCG
  GTACGGACCG AGAGTTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355567341	MGP_WTSI_2_125977741	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252903664					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355567341	MGP_WTSI_2_125977741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125993925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	within coordinates
Dtwd1	DTW domain containing 1	136 bp upstream
Fam227b	family with sequence similarity 227, member B	Coding-Synonymous
Rr367293	regulatory region 367293	within coordinates
Rr564315	regulatory region 564315	12 bp distal
Rr564316	regulatory region 564316	within coordinates
Rr564317	regulatory region 564317	121 bp proximal
Rr564318	regulatory region 564318	147 bp proximal
Tssr19931	transcription start site region 19931	126 bp upstream
Tssr19932	transcription start site region 19932	160 bp upstream
Tssr26028	transcription start site region 26028	44 bp upstream
Tssr26029	transcription start site region 26029	within coordinates
Tssr26030	transcription start site region 26030	10 bp downstream