rs252906746 SNP Detail

Summary

• ID
  rs252906746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124155439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTTTGG TCTGGTGCCG
  GCGCACCCAC ACGGAGTCTC CAATCCGGAA GGGGTGCGGT ATCACTGGTT GGTCTAGTCG
  GTCCCGGTAG GCCTCGGCCA GTGGTTTCCA AATTTCTCGC TGCACCGTTT GGAGGGCCTG
  TAAGTGAGCT TGGAGAGATG GGCTATTAGT TAATTCTGAC ATGTCGGGGT CATGGAAGTT
  R
  ACAAGGGGCG GGGGCGCCCC GTACAAGATT TCATACGGAG TCAATCCATG GGGGCCCGGA
  GTGTTCCGGG CTCGGTAGAG AGCTAAGGGG AGTAGGAGTA CCCAGTCTCT AGTGCCAGCT
  GCAAGCGTTA ATTTAGTTAG AGTCTCCTTG ATGGTTCTAT TCATTCTTTC TACCTGACCT
  GAACTCTGGG GTCTATAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322855356	CHEV_8_125952600	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252906746					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124155439 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	1220 bp upstream
Tssr79965	transcription start site region 79965	280 bp downstream
Tssr83353	transcription start site region 83353	1961 bp upstream
Tssr83354	transcription start site region 83354	1134 bp upstream
Tssr83355	transcription start site region 83355	1041 bp upstream
Tssr83356	transcription start site region 83356	971 bp upstream
Tssr83357	transcription start site region 83357	852 bp upstream
Tssr83358	transcription start site region 83358	588 bp upstream
Tssr83359	transcription start site region 83359	265 bp downstream
Tssr83360	transcription start site region 83360	372 bp downstream
Tssr83361	transcription start site region 83361	746 bp downstream
Tssr83362	transcription start site region 83362	895 bp downstream