rs252909714 SNP Detail

Summary

• ID
  rs252909714
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:58308228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TATAATTTCA
  GGTTAAAAAG AGTATACCTT GTACTAGTAA TGAAATTTAG TTTATGGTAT ATTGTACTCT
  CCCAAAAGAA TCTAAAGGCC TAATATTATG GACTTGTGCT ATGGAGTGAC ATTGCTTACA
  CATAAGGAGG TAGCTCACAG GGTTCTCTTT CTGCACTTGT TTTTCTCATA TCTGTCAATG
  W
  CTTTAAGGTA GGAATAATTT TATTTTTATC TGCTGGCTGG AAGAGAAGCA AAACTGACTT
  CTCCCACTGG AGATGAATAT GACTACTGTG TCTTTTACTG CAATTACATG TGAAGTTTCC
  TTCAGCTGTT TCTGCCCTGC AAGTGGCAAT GATACCCTAT CTATAGAGAA CCTATTCAAT
  AGAAGGGAAG TAGAATACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321551761	CHEV_5_58542125	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252909714					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:58308228 () rs orientation: forward

Symbol	Name	Function Class
Gm42976	predicted gene 42976	1042 bp upstream