rs252910724 SNP Detail

Summary

• ID
  rs252910724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76302348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGCTGTC CTGCGCGCGC GGAGCGACTG
  GAACCTGATT TTTGCTGGTG TTCACCGTGG GTGGCAGACT AGCAAAGGCC ATGGCACCAG
  CGGGAATCCT GAACGGGAAA CTGGTTTCTG CGTAAGTACT TGCCAGTGAT AGTGGTGGTG
  R
  GCTCAGAGCA GGGCGTGCAG ATCCCCAAGC GCCTGGGCTC TGCAGGAGAG GTGCTTAGAT
  GGGGTTTGCG GGAAGAGAGG ACATCGACAC GGGCTCCTAG AATCTGAAGA CTGGTTTCCT
  GAAGCCAGAG AAACACATGC CCGGCCCAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104765	CHEV_12_77356561	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252910724					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76302348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	within coordinates
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	within coordinates
Rr403350	regulatory region 403350	228 bp downstream
Rr468112	regulatory region 468112	151 bp distal
Rr468113	regulatory region 468113	153 bp proximal
Tssr113934	transcription start site region 113934	335 bp downstream
Tssr113935	transcription start site region 113935	317 bp downstream
Tssr113936	transcription start site region 113936	267 bp downstream
Tssr113937	transcription start site region 113937	237 bp downstream
Tssr113938	transcription start site region 113938	205 bp downstream
Tssr113939	transcription start site region 113939	138 bp downstream
Tssr113940	transcription start site region 113940	102 bp downstream
Tssr113941	transcription start site region 113941	80 bp downstream
Tssr116711	transcription start site region 116711	517 bp upstream
Tssr116712	transcription start site region 116712	464 bp upstream