rs252911016 SNP Detail

Summary

• ID
  rs252911016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAAAAA TAATCACTTC
  CCCTGAGGAT GGGGGACTAG CGGAAGGAAG GATGAGTGTA AGGGTCTCTG AGACAGCAGA
  GGGAGCTTTT AGTACAAGAA AGCAATGCTC CTCGGGGGCT CCTCGCGGCT CCGAGCGGTG
  GGCAGAACTG CATTTACTTA AATCCATGGG ACGGAAGCAG GAACCTGTCA AAGGGGCGAG
  R
  CTGGGGTCCA GCACCCACAG ACCCGCGACT CCCAGGAAGG GAGGGCGATA GCTGACCTCG
  GCGGAGCCAG CGTGTTCGCC ACAGAACCTT TTCCCCGCGG CCGCCACCAT CCTGCAGAAG
  CGCTTCTTCT TTTCTACGAA GTAGTTGCAT CTGCCGTCGA TGGGAAATCC GATCGAGGGC
  GAAGTCGCCG CCGGAGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895810	CHEV_3_116297500	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252911016					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13737	CpG island 13737			within coordinates
Rr397965	regulatory region 397965			181 bp upstream
Rr583746	regulatory region 583746			111 bp distal
Rr583747	regulatory region 583747			165 bp proximal
Rr583748	regulatory region 583748			246 bp proximal
Rr583749	regulatory region 583749			439 bp proximal
Rr583750	regulatory region 583750			607 bp proximal
Sass6	SAS-6 centriolar assembly protein			400 bp upstream
Trmt13	tRNA methyltransferase 13			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Tssr31360	transcription start site region 31360			377 bp upstream
Tssr35316	transcription start site region 35316			234 bp downstream
Tssr35317	transcription start site region 35317			266 bp downstream