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rs252913974 SNP Detail
Summary
  • ID
    rs252913974
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142131473 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTCTTCTT TCTTCTCTCT
AAGAGCTCTT TCCACCTGGG GTCGCCAATG GTCCCCCAGC CTCCTTCTGT CTCGGCTCCC
CCCGAGACGA TGTCTCCTTT GCTAACTATC CTGCCTTTCT ATGTGCCATT CTGCTGCGAG
GCCAGCCGCT TCTTCTCACC AGGCCCCCTC TCTAAACCTT CGTTTAGAAG GTCAGTGGAG
Y
GAGGCCAAGA GAGAAGAAGG AGACTCACCT GCCCAGCAGA CGGCGGTCCT CACCTGCCCA
CTGCTGCCAG CTATACCTTC ACTGCCCAGG TCTGGGGTCG AACCCTTCCC AGCAGCTCCC
CTTTATCCGA CCAGCCGCCA CGTCCTGTAA CCAAAAGTAA CCGGGATGAA TGTCTGGCTC
CCCATTCCTC TCCAACCCTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373453176 MGP_WTSI_7_149763641 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252913974 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373453176 MGP_WTSI_7_149763641 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142131473 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm56420 predicted gene, 56420 813 bp downstream
Gm56421 predicted gene, 56421 113 bp upstream
H19 H19, imprinted maternally expressed transcript within coordinates
Mir675 microRNA 675 589 bp upstream
Rr658231 regulatory region 658231 399 bp proximal
Rr658232 regulatory region 658232 1523 bp proximal
Tssr2460 transcription start site region 2460 476 bp downstream
Tssr2461 transcription start site region 2461 175 bp upstream
Tssr70213 transcription start site region 70213 1665 bp downstream
Tssr70214 transcription start site region 70214 1083 bp downstream
Tssr70215 transcription start site region 70215 760 bp downstream
Tssr70216 transcription start site region 70216 696 bp downstream
Tssr70217 transcription start site region 70217 679 bp downstream
Tssr70218 transcription start site region 70218 329 bp downstream
Tssr70219 transcription start site region 70219 291 bp downstream
Tssr70220 transcription start site region 70220 179 bp downstream
Tssr70221 transcription start site region 70221 140 bp downstream
Tssr70222 transcription start site region 70222 82 bp downstream
Tssr70223 transcription start site region 70223 37 bp upstream
Tssr70224 transcription start site region 70224 94 bp upstream
Tssr70225 transcription start site region 70225 132 bp upstream
Tssr70226 transcription start site region 70226 229 bp upstream
Tssr70227 transcription start site region 70227 301 bp upstream
Tssr70228 transcription start site region 70228 324 bp upstream
Tssr75815 transcription start site region 75815 1943 bp upstream
Tssr75816 transcription start site region 75816 1882 bp upstream
Tssr75817 transcription start site region 75817 1719 bp upstream
Tssr75818 transcription start site region 75818 1643 bp upstream
Tssr75819 transcription start site region 75819 1473 bp upstream
Tssr75820 transcription start site region 75820 1422 bp upstream
Tssr75821 transcription start site region 75821 1409 bp upstream
Tssr75822 transcription start site region 75822 1248 bp upstream
Tssr75823 transcription start site region 75823 1205 bp upstream
Tssr75824 transcription start site region 75824 1172 bp upstream
Tssr75825 transcription start site region 75825 1048 bp upstream
Tssr75826 transcription start site region 75826 1000 bp upstream
Tssr75827 transcription start site region 75827 980 bp upstream
Tssr75828 transcription start site region 75828 848 bp upstream
Tssr75829 transcription start site region 75829 358 bp upstream
Tssr75830 transcription start site region 75830 331 bp upstream
Tssr75831 transcription start site region 75831 310 bp upstream
Tssr75832 transcription start site region 75832 244 bp upstream
Tssr75833 transcription start site region 75833 167 bp upstream
Tssr75834 transcription start site region 75834 94 bp downstream
Tssr75835 transcription start site region 75835 130 bp downstream
Tssr75836 transcription start site region 75836 152 bp downstream
Tssr75837 transcription start site region 75837 172 bp downstream
Tssr75838 transcription start site region 75838 249 bp downstream
Tssr75839 transcription start site region 75839 262 bp downstream
Tssr75840 transcription start site region 75840 304 bp downstream
Tssr75841 transcription start site region 75841 306 bp downstream
Tssr75842 transcription start site region 75842 343 bp downstream
Tssr75843 transcription start site region 75843 350 bp downstream
Tssr75844 transcription start site region 75844 357 bp downstream
Tssr75845 transcription start site region 75845 403 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory