rs252919840 SNP Detail

Summary

• ID
  rs252919840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123276936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTAAC TACTGGCTCC
  TGTTCCGAGG CAGAACGGCA GGCAGTGCAA GCCAGAGCGA GGCCTCGTGC CCGTGTGGGC
  CTTGGGAGGC CGGGGCTGCC ACGGAGATCG GGGTCCCTCA CCCGCCTCCA GGGGCTCGCC
  CTACCCGGCC TCGGCTCCCC CCGCGGCCGC CACTGCCCGA ACCGCGCCTG GGGGGAGGGG
  Y
  TCGGGGGGAT CGAGTGCGGA GAATTAGGGT GCGCGACGCC CCCCGGGGCC TAAGGCCCCC
  CGAGACCCGT CACCAGGATC GCGGGCGCCG TGCCTGGCAG GCTGTTAGGG CCCGGGGCTG
  CCTCTCGGCT CCCAGCGACA ACCAGGGAAA AGCAGGATGG CGGAAGGAAG GAGGAAAGCC
  GGCCGCCATT AGCCAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533341	MGP_WTSI_5_123588882	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252919840					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533341	MGP_WTSI_5_123588882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123276936 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16575	CpG island 16575	953 bp distal
Cpgi16576	CpG island 16576	within coordinates
Gm38102	predicted gene, 38102	within coordinates
Rr378574	regulatory region 378574	within coordinates
Rr620111	regulatory region 620111	325 bp distal
Rr620112	regulatory region 620112	1688 bp distal
Rr620113	regulatory region 620113	within coordinates
Rr620114	regulatory region 620114	151 bp proximal
Rr620115	regulatory region 620115	373 bp proximal
Rr620116	regulatory region 620116	1223 bp proximal
Tssr48762	transcription start site region 48762	238 bp downstream
Tssr48763	transcription start site region 48763	163 bp downstream
Tssr53208	transcription start site region 53208	1133 bp upstream
Tssr53209	transcription start site region 53209	200 bp downstream
Tssr53210	transcription start site region 53210	1096 bp downstream
Tssr53211	transcription start site region 53211	1227 bp downstream
Tssr53212	transcription start site region 53212	1262 bp downstream
Tssr53213	transcription start site region 53213	1838 bp downstream