rs252922039 SNP Detail

Summary

• ID
  rs252922039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGGACA CAGGCTGGAA
  AAGGATGCAG GTTCTGAACT AAGGTCTCCA GCGACCTTTC TTCTCATCAG AATCTCAGAT
  TACCCCAAGG TGACCTAGAC ACGAGTCCAC TCTCACAGTC ACTTCCATAG TGATTTCTGG
  AGCAGGCCAC CAAGGCACAC CACGATAGCA GTTTGGTCTA GGAAAGTCAA GGGGGCTCAC
  R
  AGGTTGAGGC AGCTAGACAA ACAGCTCAAG GCCAAGAGCA AAGGGAGATA GCTGGTGGGA
  ATACCCTGCC AGGGATTCCT GCCACACCAG GCAGCCAGAG ACCCAGTTCA ACCAGGGAAA
  TACAGTTCAC AAAGTATTTT TATCCATGGA AATAAATCAG AAAACAAAAC TAGCCTCAGC
  ATTTGGAAAG GAGGATCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C3H/HeH	C57BL/6J	DBA/1J	FVB/NJ	RF/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss350399212	MGP_WTSI_1_90160960	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C3H/HeH	C57BL/6J	DBA/1J	FVB/NJ	RF/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs252922039					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399212	MGP_WTSI_1_90160960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192107 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	433 bp downstream