rs252926371 SNP Detail

Summary

• ID
  rs252926371
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97869374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGTAGT CACCTGTGTC
  TAGCTTGTTC TCTATTCAAC CTGTCTCTGT AAAACTCTCC TGGTAAAACT GTCTTCTTTC
  TCTTCTACAC ATCCTCTTAA GTAGCTTCCC TTTCCTCTCT CTATTCTCGT GAGAGTTGGG
  CATATCTTCT CCTTTCAAAT CTTAGTCTGA TTCATCTCTT TGTCTGCCAC TCAATTAAAC
  W
  TAAATTGCAA ACATGGGTGC TTTCTACAAA CTAACTTTTC CTTCACTGTT TGGTATAAAG
  GTGTATATTA AGAGTGTGTC TGTTAGCAAG AATTTTATTG AGGATTTTTG CATCGATATT
  CATAAGAGAA TTGGTCTGAA GTTCTCTATC TTTGTTGAGT CTTTCTGTGG TTTAGGTATC
  AGAGTAATAC TGGCTTCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323124739	CHEV_9_97887740	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252926371					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97869374 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr205512	regulatory region 205512	1005 bp proximal