rs252929345 SNP Detail

Summary

• ID
  rs252929345
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166902749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGGAA GATCAGAAGA
  AATTCAAAGA CAGCTTCCAC TGAGCCTGAG GCCAACATGG ACTCTATGAG ACCCTGCTTC
  AACAAACACA CACCCAAGGG CTCAGGACCT GGCCAGGCAT TCTTAGGACA CAGCAGTGGA
  CAGGTTCCCT GCTCCCTCCT GCTAGACAGC AAGTGAGCTC TTAGCCTTCT TTCCTCTCAA
  M
  CAGCTAGCAA TTCTTGCCTT GCTTCTGTCT TGAGGATTTC TGATGCTGGG TGAAGAGGAA
  GCCCCTTCAG GGAACTTCTC AATATAACTC AGGCATAGCC TGTGGATGCA GGGGGGCAGG
  GTGGTGGTGA CTCAGTTCTC AGCTAAAGGA TTTTTGAGAC TGTCCTCACA GTTTTAAAAT
  ATTCATAGTT GGAAACTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497125	MGP_WTSI_2_166886329	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252929345					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497125	MGP_WTSI_2_166886329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166902749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	1291 bp proximal
Gm75600	predicted gene, 75600	within coordinates
Rr570436	regulatory region 570436	475 bp distal
Rr570437	regulatory region 570437	267 bp distal
Rr570438	regulatory region 570438	55 bp distal
Rr570439	regulatory region 570439	561 bp proximal
Rr570440	regulatory region 570440	1062 bp proximal
Tssr21785	transcription start site region 21785	1937 bp downstream
Tssr21786	transcription start site region 21786	282 bp downstream
Tssr21787	transcription start site region 21787	441 bp upstream
Tssr21788	transcription start site region 21788	462 bp upstream
Tssr21789	transcription start site region 21789	1986 bp upstream
Tssr27731	transcription start site region 27731	760 bp upstream
Tssr27732	transcription start site region 27732	702 bp upstream
Tssr27733	transcription start site region 27733	655 bp upstream
Tssr27734	transcription start site region 27734	399 bp upstream
Tssr27735	transcription start site region 27735	373 bp upstream
Tssr27736	transcription start site region 27736	2 bp downstream
Tssr27737	transcription start site region 27737	9 bp downstream
Tssr27738	transcription start site region 27738	20 bp downstream
Tssr27739	transcription start site region 27739	240 bp downstream
Tssr27740	transcription start site region 27740	1729 bp downstream
Tssr27741	transcription start site region 27741	1778 bp downstream
Tssr27742	transcription start site region 27742	1903 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates