rs252929492 SNP Detail

Summary

• ID
  rs252929492
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77352745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTCTCT GGAAAACTGC
  ACTACTGAGT CTATGTGCTG CCTGAAACTG GCCTCATACT GCCCTTCAGA ACCTAAGATG
  GGAGGGAAGA AATCAAGAGC TCATGGGCAA GCATTGAATA AACAGCAACT CAAGAAACTG
  GCTGTATTTT ATCTTCTTGA CCTTGAACAC TACTCAAGAC TGGGTCTTGG GGGTGAGGAA
  K
  TCTGCCCTAA AATAAAGGGA TCATCTCAAA GACCAGAAGG CTAAACATCT TCAGAGTTGG
  TCTCTCTGAC CTCTAAAATA TGGCCAAATA TCTGTGCCAA CATCTTCCCC TTGAACCCAG
  TGCTGGGAGT TAGTTTACTT TTCTCTGCCT GGCTTAAGCT GTGGCTCATA GAACCTTCTA
  ATAGGGATGA AATGCCCATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755231	CHEV_11_77275421	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252929492					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77352745 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	492 bp upstream
Cpgi3305	CpG island 3305	111 bp proximal
Rr247229	regulatory region 247229	within coordinates
Ssh2	slingshot protein phosphatase 2	1699 bp downstream
Tssr103136	transcription start site region 103136	406 bp upstream
Tssr103137	transcription start site region 103137	507 bp upstream
Tssr103138	transcription start site region 103138	639 bp upstream
Tssr103139	transcription start site region 103139	648 bp upstream
Tssr103140	transcription start site region 103140	686 bp upstream