rs252940434 SNP Detail

Summary

• ID
  rs252940434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83485042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGATGT GACCTGTGGA
  GCCTAGCACA CACAAAGCTG TGGGCTGGAT CTGGAGCAGA GAACTCCAGT ATGGTGGCAC
  ACGCCTGTAA TCCTAGAACT TGAGAGGTGG AGGTAGGAGG CTCAGAAGTT CAGTCATCCT
  TGGCTACACA GTGCATTGGA GGCCATCTTG GGATGTACGA GACTAGCTCA AAAAGGAGGA
  R
  GGGGCTTGCA AGTTGACTAA AGGCACTTGC TGCTAAGCCT GTTCACCACA GGGTCACAAT
  CCTCAGGTCC CACGTGGTGA AATGAGAGAA CCACCACCTG AAAGGTGTCC TCTGACCACT
  GCACTTAGCC TTGGCTACAA CAACTATAAT CTAGGTAGGA TTCTCGTGGA GATCGGAGCC
  GCTAAATTCT ATCCATTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369033006	MGP_WTSI_6_83458054	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252940434					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369033006	MGP_WTSI_6_83458054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83485042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	674 bp distal
Dguok	deoxyguanosine kinase	1155 bp upstream
Rr399724	regulatory region 399724	882 bp downstream
Tssr1908	transcription start site region 1908	954 bp downstream
Tssr61663	transcription start site region 61663	1800 bp upstream
Tssr61664	transcription start site region 61664	1237 bp upstream
Tssr61665	transcription start site region 61665	1225 bp upstream
Tssr61666	transcription start site region 61666	1210 bp upstream
Tssr61667	transcription start site region 61667	1184 bp upstream
Tssr61668	transcription start site region 61668	1166 bp upstream
Tssr61669	transcription start site region 61669	1133 bp upstream