rs252945339 SNP Detail

Summary

• ID
  rs252945339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74317419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCCTTCG GGAGCCTCTC ACCCAGTGGC
  TGGCCAGTTA CTGTCCTCTC TTGGCACCCT GATGTGGGTA GGCAAAGATT GACAGATGCT
  TTGGGTAGGT TGCCTTCCAG TCTAGACAGG CATAAACATA GCTGCCCAGG GGCTGCAGGA
  Y
  GGCTGAGAGG CGAAGCTGCC TGTGGGAACT GTGGTTATCG CCTGAAGTGT AGCCTCTTCT
  AAGATAACAC CAGAATTGAT TTTCCAAGAA AACCCAAAAG CAAGACTTCC CTATGCAGTT
  GGTTTTTTTT AGTTGGtttt tttttttttt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319794410	CHEV_1_74324834	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252945339					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74317419 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	1580 bp downstream
Gpbar1	G protein-coupled bile acid receptor 1	290 bp upstream
Rr17376	regulatory region 17376	982 bp proximal
Tssr7370	transcription start site region 7370	1140 bp downstream