rs252946529 SNP Detail

Summary

• ID
  rs252946529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7351115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTTAAC CCATCATCTC
  AGTACCCTTA CTAATATCTC CTGGAAATCC TCAGTTATAC AATTCATTCA TATGGAATAC
  ATAAGGAGAA ATTCAAGAAC ATGGTCTCCC TACTCCAAAT CCTCCTTCTC TGGCTGATTT
  TTCATGTGAT ATGTAGCTAT GTAATTTACA TACCCCATGT CTACCACAAA GGTAGACATA
  W
  ACCCTAAAGC TTATCAAAAT TTTGATAAGG ACATTTGAAG ACTATAAGGT GCATCATGTA
  TGACTTACTA CTTGCTGAAC TACAACTTCT TAACCAGACA TAGCCATGTG TCTGAGGTTT
  TTCCTGGGTT ATTTGGGGAT TGGGTGTAAC CTCTTCATCA ACTGATACTG CTTTGGAATC
  TAATGAACCC TAGAAATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560285	MGP_WTSI_9_7351115	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252946529					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560285	MGP_WTSI_9_7351115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7351115 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83699	transcription start site region 83699	1997 bp downstream
Tssr83700	transcription start site region 83700	1936 bp downstream
Tssr83701	transcription start site region 83701	1888 bp downstream
Tssr83702	transcription start site region 83702	1866 bp downstream
Tssr83703	transcription start site region 83703	1384 bp downstream
Tssr83704	transcription start site region 83704	1350 bp downstream
Tssr83705	transcription start site region 83705	1088 bp downstream
Tssr83706	transcription start site region 83706	1061 bp downstream
Tssr83707	transcription start site region 83707	1039 bp downstream
Tssr83708	transcription start site region 83708	1021 bp downstream
Tssr83709	transcription start site region 83709	998 bp downstream
Tssr83710	transcription start site region 83710	481 bp downstream
Tssr83711	transcription start site region 83711	within coordinates
Tssr83712	transcription start site region 83712	858 bp upstream
Tssr83713	transcription start site region 83713	1260 bp upstream
Tssr83714	transcription start site region 83714	1432 bp upstream
Tssr83715	transcription start site region 83715	1484 bp upstream
Tssr83716	transcription start site region 83716	1755 bp upstream
Tssr83717	transcription start site region 83717	1796 bp upstream
Tssr83718	transcription start site region 83718	1816 bp upstream
Tssr83719	transcription start site region 83719	1842 bp upstream
Tssr83720	transcription start site region 83720	1871 bp upstream
Tssr88066	transcription start site region 88066	992 bp upstream
Tssr88067	transcription start site region 88067	1865 bp downstream
Tssr88068	transcription start site region 88068	1913 bp downstream