rs252949585 SNP Detail

Summary

• ID
  rs252949585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTCTGG GAATCTGTTC
  TCTCTTTCTG TCATGGGGCC TGGGAGATGG AGCGCAAGAC ATAAAGTTTG GCAGCCAGTT
  CCTTTACCTG CTGACCCATC TCGCCAGCCT CCCATCTTAT ATTTTGTGAG GCAGAGGTCT
  CCCACTGAAC TAGGGCTTGC TAGTCTGGCT AGACAGACTG GCTGACAAGC CCCTGGTGTC
  Y
  GCCTGTCTTT GCCCCCAAGT CTGAGATTGC AGATCTCCAA GGTGAATCCT AGCCTTTATG
  TAGCCACTGG GGACGCAAGC CGGAGCTCCT CCTGCTTGTG CAGCAAAGAT CTCACCCTCC
  GAGCAGCCAT CTCCTCAGTC CTGCTAGCGC TTCCTTTATG TCACTATTTC CTCACTAACA
  TCAAACTAAA AACAAATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324360219	CHEV_13_60131854	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252949585					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178307 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	108 bp distal
Tssr120109	transcription start site region 120109	864 bp downstream
Tssr120110	transcription start site region 120110	800 bp downstream
Tssr120111	transcription start site region 120111	784 bp downstream