rs252952496 SNP Detail

Summary

• ID
  rs252952496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCCGGA GAGGAGGGTG
  GTGGTCTGTA GTCACATGAC ATGTCCAAAT CACATCAAGA GGCTGGCCCT GCAGCTGGGG
  CTCCATTGCC TTTCCTGCTA AGCAATCTAT ACCTTCACCT GTGCCAGCTC ACCTTACCCA
  TCCTGATCGC TGGGACAATG ACACCCCTTT TTTCTCCTGG GCAATCGGCT ACTCTGTTTC
  Y
  AACAGTCAAT CCTACCATCT GTTCACCCCA CCATCTGTTC ACCCCACCTG ACCTCTCCAC
  TCACCATGCT TCCATGAAGT GTGTCTAAAG GATAGGTTGG AGCAATACTG GGTGTGGTCT
  TGTCCGGCAG TAGTGTGGGC GGGCAGATGG AGTTTACCTT TATAATCCTA TTTTGGTCCA
  TGGAAGAGCC TTGGAATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352950	MGP_WTSI_17_47866580	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252952496					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352950	MGP_WTSI_17_47866580	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040556 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1078 bp proximal
Tssr5147	transcription start site region 5147	880 bp downstream
Tssr5148	transcription start site region 5148	318 bp upstream
Tssr5149	transcription start site region 5149	1852 bp upstream
Tssr145004	transcription start site region 145004	889 bp downstream
Tssr145005	transcription start site region 145005	868 bp downstream
Tssr145006	transcription start site region 145006	839 bp downstream
Tssr145007	transcription start site region 145007	807 bp downstream
Tssr145008	transcription start site region 145008	786 bp downstream
Tssr145009	transcription start site region 145009	758 bp downstream
Tssr145010	transcription start site region 145010	376 bp downstream
Tssr145011	transcription start site region 145011	357 bp downstream
Tssr145012	transcription start site region 145012	340 bp downstream
Tssr145013	transcription start site region 145013	288 bp downstream
Tssr145014	transcription start site region 145014	449 bp upstream
Tssr145015	transcription start site region 145015	511 bp upstream
Tssr145016	transcription start site region 145016	522 bp upstream
Tssr145017	transcription start site region 145017	967 bp upstream
Tssr145018	transcription start site region 145018	979 bp upstream
Tssr145019	transcription start site region 145019	1010 bp upstream
Tssr145020	transcription start site region 145020	1031 bp upstream
Tssr145021	transcription start site region 145021	1057 bp upstream
Tssr145022	transcription start site region 145022	1089 bp upstream
Tssr145023	transcription start site region 145023	1116 bp upstream
Tssr145024	transcription start site region 145024	1227 bp upstream
Tssr145025	transcription start site region 145025	1571 bp upstream
Tssr145026	transcription start site region 145026	1827 bp upstream
Tssr148459	transcription start site region 148459	830 bp upstream
Tssr148460	transcription start site region 148460	778 bp upstream
Tssr148461	transcription start site region 148461	766 bp upstream
Tssr148462	transcription start site region 148462	723 bp upstream
Tssr148463	transcription start site region 148463	350 bp upstream
Tssr148464	transcription start site region 148464	265 bp upstream
Tssr148465	transcription start site region 148465	490 bp downstream
Tssr148466	transcription start site region 148466	503 bp downstream
Tssr148467	transcription start site region 148467	998 bp downstream
Tssr148468	transcription start site region 148468	1029 bp downstream
Tssr148469	transcription start site region 148469	1119 bp downstream