rs252955128 SNP Detail

Summary

• ID
  rs252955128
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76701607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACGTTT TAAAATAAAG
  ACAGCCTGCC TGGCCCGGGA TGCACAGCCT GCCGGCTCGC AGCCCCCACC CACCCCACGC
  CTGCCAAACA GCAGGCGCCC AGGGAGTTCC AAGTCTGAAA GGCCGGGGAG AGGACCACCC
  GAGCCTGCCG CAGAGGCCCT GCCGCGAAGC CAGGGCGCAC CACGCGCAAG CAAGCCACGA
  S
  CCGACCCAGA GACGCCCACC GACTGCCGGG CATCGCGGAC AAAGCCTAGC CCGCAAGATC
  CTCGTTCGGC AAGCACTATC TCTCACCACC CCCAAACGGA CCGGAGCCCA GTGCACAGAA
  AGGGCACAAG CACACCACCG GCTCTGGGCC TGGACACAGA ACGCACGCAC ACCTGTCCTC
  GGGCTGACTA CACACACCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394621649	MGP_WTSI_15_76647837	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252955128					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394621649	MGP_WTSI_15_76647837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76701607 () rs orientation: forward

Symbol	Name	Function Class
Arhgap39	Rho GTPase activating protein 39	within coordinates
Cpgi7256	CpG island 7256	within coordinates
Gm41350	predicted gene, 41350	828 bp upstream
Gm62667	predicted gene, 62667	161 bp downstream
Rr404466	regulatory region 404466	681 bp upstream
Rr504853	regulatory region 504853	within coordinates
Rr504854	regulatory region 504854	426 bp proximal
Rr504855	regulatory region 504855	579 bp proximal
Rr504856	regulatory region 504856	794 bp proximal
Rr504857	regulatory region 504857	866 bp proximal
Rr504858	regulatory region 504858	935 bp proximal
Tssr131826	transcription start site region 131826	873 bp upstream
Tssr135056	transcription start site region 135056	374 bp upstream
Tssr135057	transcription start site region 135057	686 bp downstream