GGTTCGGTCC TGCCCCGGCC TGGGAAGCCA CCGCGGGCCG GGCTCCCAGA ACGTGGCGCT TCGGGTCACC TGACCGCGCG CCCGGTCAAT CAGCGCTAGC CCTAGGCGCC CTCCCAGCCC GCAGCAGCCG GCTCCGTGCG GTGCGCGGTG CGAGAATCCC GGAACCAGTC GTGCGTGCTG GAAGCCAGAA GCTGGAATAG K CACCGCGCGC ACGCACCGTG CCCTTTATTC AAATTGTCCG AAAATGTGTG TCACACCCCT CTAGGCACAC TAGGTCTCTT ATCAACAGTA CTTTTAATTT TTTTTATTAT TATCTTACAT AAATCTCAAC CTTCTGGCCA ATTCGCCCCA TTTCAGTTTA CTGAGGTTGT TGAGTTTGGG GTTCTAAATC CAGGGGTATA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss379469255 | MGP_WTSI_10_12589437 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | T | T |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs252955149 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | G | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss379469255 | MGP_WTSI_10_12589437 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | G/T |
Location: Chr10:12745383 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi1300 | CpG island 1300 | 1910 bp distal | ||||||
Cpgi1301 | CpG island 1301 | within coordinates | ||||||
Gm66629 | predicted gene, 66629 | within coordinates | ||||||
Rr224421 | regulatory region 224421 | within coordinates | ||||||
Tssr3138 | transcription start site region 3138 | 152 bp upstream | ||||||
Tssr92368 | transcription start site region 92368 | 1207 bp downstream | ||||||
Tssr92369 | transcription start site region 92369 | 658 bp downstream | ||||||
Tssr96723 | transcription start site region 96723 | 1452 bp upstream | ||||||
Tssr96724 | transcription start site region 96724 | 1412 bp upstream | ||||||
Tssr96725 | transcription start site region 96725 | 1335 bp upstream | ||||||
Tssr96726 | transcription start site region 96726 | 502 bp upstream | ||||||
Tssr96727 | transcription start site region 96727 | 417 bp upstream | ||||||
Tssr96728 | transcription start site region 96728 | 122 bp upstream | ||||||
Tssr96729 | transcription start site region 96729 | within coordinates | ||||||
Utrn | utrophin | 274 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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